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- Well, before we even knew what DNA was, much less how it was
- structured or it was replicated or even before we
- could look in and see meiosis happening in cells, we had the
- general sense that offspring were the products of some
- traits that their parents had.
- That if I had a guy with blue eyes-- let me say this is the
- blue-eyed guy right here --and then if he were to marry a
- brown-eyed girl-- Let's say this is the brown-eyed girl.
- Maybe make it a little bit more like a girl.
- If he were to marry the brown-eyed girl there, that
- most of the time, or maybe in all cases where we're dealing
- with the brown-eyed girl, maybe their kids are
- brown-eyed.
- Let me do this so they have a little brown-eyed baby here.
- And this is just something-- I mean, there's obviously
- thousands of generations of human beings, and we've
- observed this.
- We've observed that kids look like their parents, that they
- inherit some traits, and that some traits seem to dominate
- other traits.
- One example of that tends to be a darker pigmentation in
- maybe the hair or the eyes.
- Even if the other parent has light pigmentation, the darker
- one seems to dominate, or sometimes, it actually ends up
- being a mix, and we've seen that all around us.
- Now, this study of what gets passed on and how it gets
- passed on, it's much older than the study of DNA, which
- was really kind of discovered or became a big deal in the
- middle of the 20th century.
- This was studied a long time.
- And kind of the father of classical genetics and
- heredity is Gregor Mendel.
- He was actually a monk, and he would mess around with plants
- and cross them and see which traits got passed and which
- traits didn't get passed and tried to get an understanding
- of how traits are passed from one generation to another.
- So when we do this, when we study this classical genetics,
- I'm going to make a bunch of simplifying assumptions
- because we know that most of these don't hold for most of
- our genes, but it'll give us a little bit of sense of how to
- predict what might happen in future generations.
- So the first simplifying assumption I'll make is that
- some traits have kind of this all or nothing property.
- And we know that a lot of traits don't.
- Let's say that there are in the world-- and this is a
- gross oversimplification --let's say for eye color,
- let's say that there are two alleles.
- Now remember what an allele was.
- An allele is a specific version of a gene.
- So let's say that you could have blue eye color or you
- could have brown eye color.
- That we live in a universe where someone could only have
- one of these two versions of the eye color gene.
- We know that eye color is far more complex than that, so
- this is just a simplification.
- And let me just make up another one.
- Let me say that, I don't know, maybe for tooth size, that's a
- trait you won't see in any traditional biology textbook,
- and let's say that there's one trait for big teeth and
- there's another allele for small teeth.
- And I want to make very clear this distinction between a
- gene and an allele.
- I talked about Gregor Mendel, and he was doing this in the
- 1850s well before we knew what DNA was or what even
- chromosomes were and how DNA was passed on, et cetera, but
- let's go into the microbiology of it to understand the
- difference.
- So I have a chromosome.
- Let's say on some chromosome-- let me pick
- some chromosome here.
- Let's say this is some chromosome.
- Let's say I got that from my dad.
- And on this chromosome, there's some location here--
- we could call that the locus on this chromosome where the
- eye color gene is --that's the location of
- the eye color gene.
- Now, I have two chromosomes, one from my father and one
- from my mother, so let's say that this is the chromosome
- from my mother.
- We know that when they're normally in the cell, they
- aren't nice and neatly organized like this in the
- chromosome, but this is just to kind of show you the idea.
- Let's say these are homologous chromosomes so they code for
- the same genes.
- So on this gene from my mother on that same location or
- locus, there's also the eye color gene.
- Now, I might have the same version of the gene and I'm
- saying that there's only two versions of
- this gene in the world.
- Now, if I have the same version of the gene-- I'm
- going to make a little shorthand notation.
- I'm going to write big B-- Actually, let me do
- it the other way.
- I'm going to write little b for blue and I'm going to
- write big B for brown.
- There's a situation where this could be a little b and this
- could be a big B.
- And then I could write that my genotype-- I have the allele,
- I have one big B from my mom and I have one
- small b from my dad.
- Each of these instances, or ways that this gene is
- expressed, is an allele.
- So these are two different alleles-- let me write that
- --or versions of the same gene.
- And when I have two different versions like this, one
- version from my mom, one version from my dad, I'm
- called a heterozygote, or sometimes it's called a
- heterozygous genotype.
- And the genotype is the exact version of the alleles I have.
- Let's say I had the lowercase b.
- I had the blue-eyed gene from both parents.
- So let's say that I was lowercase b, lowercase b, then
- I would have two identical alleles.
- Both of my parents gave me the same version of the gene.
- And this case, this genotype is homozygous, or this is a
- homozygous genotype, or I'm a homozygote for this trait.
- Now, you might say, Sal, this is fine.
- These are the traits that you have. I have a brown from
- maybe my mom and a blue from my dad.
- In this case, I have a blue from both my mom and dad.
- How do we know whether my eyes are going to be brown or blue?
- And the reality is it's very complex.
- It's a whole mixture of things.
- But Mendel, he studied things that showed
- what we'll call dominance.
- And this is the idea that one of these traits
- dominates the other.
- So a lot of people originally thought that eye color,
- especially blue eyes, was always dominated
- by the other traits.
- We'll assume that here, but that's a gross
- oversimplification.
- So let's say that brown eyes are dominant
- and blue are recessive.
- I wanted to do that in blue.
- Blue eyes are recessive.
- If this is the case, and this is a-- As I've said
- repeatedly, this is a gross oversimplification.
- But if that is the case, then if I were to inherit this
- genotype, because brown eyes are dominant-- remember, I
- said the big B here represents brown eye and the lowercase b
- is recessive --all you're going to see for the person
- with this genotype is brown eyes.
- So let me do this here.
- Let me write this here.
- So genotype, and then I'll write phenotype.
- Genotype is the actual versions of the gene you have
- and then the phenotypes are what's expressed
- or what do you see.
- So if I get a brown-eyed gene from my dad-- And I want to do
- it in a big-- I want to do it in brown.
- Let me do it in brown so you don't get confused.
- So if I've have a brown-eyed gene from my dad and a
- blue-eyed gene from my mom, because the brown eye is
- recessive, the brown-eyed allele is recessive-- And I
- just said a brown-eyed gene, but what I should say is the
- brown-eyed version of the gene, which is the brown
- allele, or the blue-eyed version of the gene from my
- mom, which is the blue allele.
- Since the brown allele is dominant-- I wrote that up
- here --what's going to be expressed are brown eyes.
- Now, let's say I had it the other way.
- Let's say I got a blue-eyed allele from my dad and I get a
- brown-eyed allele for my mom.
- Same thing.
- The phenotype is going to be brown eyes.
- Now, what if I get a brown-eyed allele from both my
- mom and my dad?
- Let me see, I keep changing the shade of brown, but
- they're all supposed to be the same.
- So let's say I get two dominant brown-eyed alleles
- from my mom and my dad.
- Then what are you going to see?
- Well, you could guess that.
- I'm still going to see brown eyes.
- So there's only one last combination because these are
- the only two types of alleles we might see in our
- population, although for most genes, there's
- more than two types.
- For example, there's blood types.
- There's four types of blood.
- But let's say that I get two blue, one blue allele from
- each of my parents, one from my dad, one from my mom.
- Then all of a sudden, this is a recessive trait, but there's
- nothing to dominate it.
- So, all of a sudden, the phenotype will be blue eyes.
- And I want to repeat again, this isn't necessarily how the
- alleles for eye color work, but it's a nice simplification
- to maybe understand how heredity works.
- There are some traits that can be studied in this simple way.
- But what I wanted to do here is to show you that many
- different genotypes-- so these are all different genotypes
- --they all coded for the same phenotype.
- So just by looking at someone's eye color, you
- didn't know exactly whether they were homozygous
- dominant-- this would be homozygous dominant --or
- whether they were heterozygotes.
- This is heterozygous right here.
- These two right here are heterozygotes.
- These are also sometimes called hybrids, but the word
- hybrid is kind of overloaded.
- It's used a lot, but in this context, it means that you got
- different versions of the allele for that gene.
- So let's think a little bit about what's actually
- happening when my mom and my dad reproduced.
- Well, let's think of a couple of different scenarios.
- Let's say that they're both hybrids.
- My dad has the brown-eyed dominant allele and he also
- has the blue-eyed recessive allele.
- Let's say my mom has the same thing, so brown-eyed dominant,
- and she also has the blue-eyed recessive allele.
- Now let's think about if these two people, before you see
- what my eye color is, if you said, look, I'm giving you
- what these two people's genotypes are.
- Let me label them.
- Let me make this the mom.
- I think this is the standard convention.
- And let's make this right here, this is the dad.
- What are the different genotypes that their children
- could have?
- So let's say they reproduce.
- I'm going to draw a little grid here.
- So let me draw a grid.
- So we know from our study of meiosis that, look, my mom has
- this gene on-- Let me draw the genes again.
- So there's a homologous pair, right?
- This is one chromosome right here.
- That's another chromosome right there.
- On this chromosome in the homologous pair, there might
- be-- at the eye color locus --there's the brown-eyed gene.
- And at this one, at the eye color locus, there's a
- blue-eyed gene.
- And similarly from my dad, when you look at that same
- chromosome in his cells-- Let me do them like this.
- So this is one chromosome there and this is the other
- chromosome here.
- When you look at that locus on this chromosome or that
- location, it has the brown-eyed allele for that
- gene, and on this one, it has the blue-eyed
- allele on this gene.
- And we learn from meiosis when the chromosomes-- Well, they
- replicate first, and so you have these two chromatids on a
- chromosome.
- But they line up in meiosis I during the metaphase.
- And we don't know which way they line up.
- For example, my dad might give me this chromosome or might
- give me that chromosome.
- Or my mom might give me that chromosome or might give me
- that chromosome.
- So I could have any of these combinations.
- So, for example, if I get this chromosome from my mom and
- this chromosome from my dad, what is the genotype going to
- be for eye color?
- Well, it's going to be capital B and capital B.
- If I get this chromosome from my mom and this chromosome
- from my dad, what's it going to be?
- Well, I'm going to get the big B from my dad and then I'm
- going to get the lowercase b from my mom.
- So this is another possibility.
- Now, this is another possibility here where I get
- the brown-eyed allele from my mom and I get the blue eye
- allele from my dad.
- And then there's a possibility that I get this chromosome
- from my dad and this chromosome from my mom, so
- it's this situation.
- Now, what are the phenotypes going to be?
- Well, we've already seen that this one right here is going
- to be brown, that one's going to be brown, this one's going
- to be brown, but this one is going to be blue.
- I already showed you this.
- But if I were to tell you ahead of time that, look, I
- have two people.
- They're both hybrids, or they're both heterozygotes for
- eye color, and eye color has this
- recessive dominant situation.
- And they're both heterozygotes where they each have one brown
- allele and one blue allele, and they're going to have a
- child, what's the probability that the child has brown eyes?
- What's the probability?
- Well, each of these scenarios are equally likely, right?
- There's four equal scenarios.
- So let's put that in the denominator.
- Four equal scenarios.
- And how many of those scenarios end
- up with brown eyes?
- Well, it's one, two, three.
- So the probability is 3/4, or it's a 75% probability.
- Same logic, what's the probability that these parents
- produce an offspring with blue eyes?
- Well, that's only one of the four equally likely
- possibilities, so blue eyes is only 25%.
- Now, what is the probability that they produce a
- heterozygote?
- So what is the probability that they produce a
- heterozygous offspring?
- So now we're not looking at the phenotype anymore.
- We're looking at the genotype.
- So of these combinations, which are heterozygous?
- Well, this one is, because it has a mix.
- It's a hybrid.
- It has a mix of the two alleles.
- And so is this one.
- So what's the probability?
- Well, there's four different combinations.
- All of those are equally likely, and two of them result
- in a heterozygote.
- So it's 2/4 or 1/2 or 50%.
- So using this Punnett square, and, of course, we had to make
- a lot of assumptions about the genes and whether one's
- dominant or one's a recessive, we can start to make
- predictions about the probabilities
- of different outcomes.
- And as we'll see in future videos, you can actually even
- go backwards.
- You can say, hey, given that this couple had five kids with
- brown eyes, what's the probability that they're both
- heterozygotes, or something like that.
- So it's a really interesting area, even though it is a bit
- of oversimplification.
- But many traits, especially some of the things that Gregor
- Mendel studied, can be studied in this way.